Nickel in PDB 7b9b: Crystal Structure of Human 5' Exonuclease Appollo Apo Form

The structure of Crystal Structure of Human 5' Exonuclease Appollo Apo Form, PDB code: 7b9b was solved by J.A.Newman, H.T.Baddock, S.M.M.Mukhopadhyay, N.A.Burgess-Brown, F.Vondelft, C.H.Arrowshmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.21 / 2.80
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	90.417, 90.417, 104.164, 90, 90, 90
R / Rfree (%)	26.6 / 32.1

The binding sites of Nickel atom in the Crystal Structure of Human 5' Exonuclease Appollo Apo Form (pdb code 7b9b). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Human 5' Exonuclease Appollo Apo Form, PDB code: 7b9b:

Nickel binding site 1 out of 1 in the Crystal Structure of Human 5' Exonuclease Appollo Apo Form


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human 5' Exonuclease Appollo Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni401 b:116.9 occ:1.00 NE2 A:HIS31 2.3 86.9 1.0 OD2 A:ASP120 2.3 93.6 1.0 NE2 A:HIS99 2.4 85.5 1.0 O A:HOH501 2.4 94.4 1.0 ND1 A:HIS33 2.4 96.2 1.0 CE1 A:HIS31 3.0 88.1 1.0 NE2 A:HIS36 3.2 99.2 1.0 CD2 A:HIS31 3.3 87.5 1.0 CD2 A:HIS99 3.3 82.2 1.0 CE1 A:HIS99 3.3 82.8 1.0 CE1 A:HIS33 3.4 94.3 1.0 CG A:ASP120 3.4 88.2 1.0 CG A:HIS33 3.4 91.0 1.0 CB A:HIS33 3.7 94.0 1.0 CB A:ASP120 3.8 82.7 1.0 CD2 A:HIS36 3.9 100.3 1.0 ND1 A:HIS31 4.1 85.5 1.0 CE1 A:HIS36 4.2 95.5 1.0 CG A:HIS31 4.2 83.8 1.0 ND1 A:HIS99 4.4 80.4 1.0 CG A:HIS99 4.4 80.2 1.0 OD1 A:ASP120 4.5 89.6 1.0 NE2 A:HIS33 4.5 88.9 1.0 CD2 A:HIS33 4.6 88.7 1.0

J.A.Newman, H.T.Baddock, S.M.M.Mukhopadhyay, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowshmith, A.Edwards, C.Bountra, O.Gileadi. Crystal Structure of Human 5' Exonuclease Appollo H61Y Variant To Be Published.