Nickel in PDB 7cm4: Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59

The structure of Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59, PDB code: 7cm4 was solved by Y.G.Kim, J.H.Jeong, J.S.Bae, J.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.76 / 2.71
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	65.55, 167.6, 169.05, 90, 90, 90
R / Rfree (%)	21.7 / 24.2

The binding sites of Nickel atom in the Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59 (pdb code 7cm4). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59, PDB code: 7cm4:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59 within 5.0Å range: probe atom residue distance (Å) B Occ H:Ni501 b:100.6 occ:1.00 NE2 H:HIS61 3.4 66.5 1.0 CD H:LYS59 3.4 40.5 1.0 N H:ILE71 3.4 53.4 1.0 CA H:THR70 3.7 57.9 1.0 CE1 H:HIS61 3.8 49.6 1.0 CG2 H:THR70 3.8 60.2 1.0 O H:ILE71 3.8 46.0 1.0 C H:THR70 4.1 47.8 1.0 O H:LEU69 4.2 52.5 1.0 CG2 H:ILE71 4.2 42.6 1.0 CB H:THR70 4.3 44.2 1.0 CE H:LYS59 4.4 46.6 1.0 CA H:ILE71 4.5 44.7 1.0 CB H:LYS59 4.5 43.5 1.0 CG H:LYS59 4.5 42.0 1.0 CD2 H:HIS61 4.6 60.8 1.0 C H:ILE71 4.6 46.6 1.0 N H:THR70 4.8 51.1 1.0 CB H:ILE71 4.9 39.2 1.0 OG1 H:THR70 4.9 81.2 1.0 C H:LEU69 4.9 46.8 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Covid-19 Virus Spike Receptor-Binding Domain Complexed with A Neutralizing Antibody Ct-P59 within 5.0Å range: probe atom residue distance (Å) B Occ L:Ni303 b:119.3 occ:1.00 CE1 L:HIS192 2.1 86.8 1.0 NE2 L:HIS192 2.2 93.8 1.0 ND1 L:HIS192 3.4 100.3 1.0 CD2 L:HIS192 3.6 94.7 1.0 CG L:HIS192 4.1 91.7 1.0

Y.G.Kim, J.H.Jeong, J.S.Bae, J.H.Lee. To Be Publish To Be Published.