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Nickel in PDB 7dh6: Crystal Structure of PLRG1

Protein crystallography data

The structure of Crystal Structure of PLRG1, PDB code: 7dh6 was solved by X.Wang, C.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.16 / 2.58
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.005, 82.124, 99.388, 90.00, 99.44, 90.00
R / Rfree (%) 22.6 / 27.6

Other elements in 7dh6:

The structure of Crystal Structure of PLRG1 also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of PLRG1 (pdb code 7dh6). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of PLRG1, PDB code: 7dh6:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 7dh6

Go back to Nickel Binding Sites List in 7dh6
Nickel binding site 1 out of 2 in the Crystal Structure of PLRG1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of PLRG1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni601

b:36.5
occ:1.00
NE2 A:HIS285 2.2 74.3 1.0
ND1 A:HIS283 2.4 50.1 1.0
CE1 A:HIS285 3.1 71.8 1.0
CD2 A:HIS285 3.2 73.1 1.0
CG A:HIS283 3.3 48.8 1.0
CE1 A:HIS283 3.4 50.1 1.0
CB A:HIS283 3.5 48.0 1.0
ND1 A:HIS285 4.2 72.3 1.0
CG A:HIS285 4.3 72.5 1.0
O2 A:SO4602 4.5 76.2 1.0
CD2 A:HIS283 4.5 48.2 1.0
NE2 A:HIS283 4.5 48.8 1.0
CA A:HIS283 5.0 45.7 1.0

Nickel binding site 2 out of 2 in 7dh6

Go back to Nickel Binding Sites List in 7dh6
Nickel binding site 2 out of 2 in the Crystal Structure of PLRG1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of PLRG1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ni601

b:36.8
occ:1.00
NE2 C:HIS285 2.0 59.3 1.0
ND1 C:HIS283 2.5 39.0 1.0
CE1 C:HIS285 3.0 55.8 1.0
CD2 C:HIS285 3.0 55.9 1.0
CG C:HIS283 3.2 37.4 1.0
CB C:HIS283 3.2 34.6 1.0
CE1 C:HIS283 3.6 39.4 1.0
ND1 C:HIS285 4.1 56.2 1.0
CG C:HIS285 4.1 55.2 1.0
CD2 C:HIS283 4.4 37.6 1.0
NE2 C:HIS283 4.5 38.5 1.0
CA C:HIS283 4.7 31.0 1.0

Reference:

X.Wang, C.Xu. Crystal Structure of PLRG1 To Be Published.
Page generated: Wed Dec 16 01:59:35 2020

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