Nickel in PDB 7dh6: Crystal Structure of PLRG1

The structure of Crystal Structure of PLRG1, PDB code: 7dh6 was solved by X.Wang, C.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.16 / 2.58
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	68.005, 82.124, 99.388, 90.00, 99.44, 90.00
R / Rfree (%)	22.6 / 27.6

The structure of Crystal Structure of PLRG1 also contains other interesting chemical elements:

Calcium

(Ca)

3 atoms

The binding sites of Nickel atom in the Crystal Structure of PLRG1 (pdb code 7dh6). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of PLRG1, PDB code: 7dh6:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of PLRG1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of PLRG1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni601 b:36.5 occ:1.00 NE2 A:HIS285 2.2 74.3 1.0 ND1 A:HIS283 2.4 50.1 1.0 CE1 A:HIS285 3.1 71.8 1.0 CD2 A:HIS285 3.2 73.1 1.0 CG A:HIS283 3.3 48.8 1.0 CE1 A:HIS283 3.4 50.1 1.0 CB A:HIS283 3.5 48.0 1.0 ND1 A:HIS285 4.2 72.3 1.0 CG A:HIS285 4.3 72.5 1.0 O2 A:SO4602 4.5 76.2 1.0 CD2 A:HIS283 4.5 48.2 1.0 NE2 A:HIS283 4.5 48.8 1.0 CA A:HIS283 5.0 45.7 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of PLRG1


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of PLRG1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ni601 b:36.8 occ:1.00 NE2 C:HIS285 2.0 59.3 1.0 ND1 C:HIS283 2.5 39.0 1.0 CE1 C:HIS285 3.0 55.8 1.0 CD2 C:HIS285 3.0 55.9 1.0 CG C:HIS283 3.2 37.4 1.0 CB C:HIS283 3.2 34.6 1.0 CE1 C:HIS283 3.6 39.4 1.0 ND1 C:HIS285 4.1 56.2 1.0 CG C:HIS285 4.1 55.2 1.0 CD2 C:HIS283 4.4 37.6 1.0 NE2 C:HIS283 4.5 38.5 1.0 CA C:HIS283 4.7 31.0 1.0

X.Wang, C.Xu. Crystal Structure of PLRG1 To Be Published.