Nickel in PDB 7odh: Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State

Enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State

All present enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State:
1.12.99.6;

Protein crystallography data

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State, PDB code: 7odh was solved by A.Schmidt, J.Kalms, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	52.59 / 1.34
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	73.606, 95.676, 120.824, 90, 90, 90
*R / R_free (%)*	11.2 / 13.3

Other elements in 7odh:

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State also contains other interesting chemical elements:

Chlorine	(Cl)	6 atoms
Iron	(Fe)	14 atoms
Magnesium	(Mg)	1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State (pdb code 7odh). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State, PDB code: 7odh:

Nickel binding site 1 out of 1 in 7odh

Go back to

Nickel Binding Sites List in 7odh

Nickel binding site 1 out of 1 in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State

Mono view

Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
L:Ni701 b:11.3 occ:1.00	NI	L:NFV701	0.0	11.3	1.0
	O4	L:NFV701	1.8	11.5	1.0
	SG	L:CYS597	2.2	11.7	1.0
	SG	L:CYS75	2.2	11.3	1.0
	SG	L:CYS78	2.3	10.2	1.0
	SG	L:CYS600	2.7	10.8	1.0
	FE	L:NFV701	2.9	10.1	1.0
	CB	L:CYS75	3.1	11.0	1.0
	CB	L:CYS597	3.2	10.6	1.0
	CB	L:CYS78	3.4	10.0	1.0
	CB	L:CYS600	3.6	10.0	1.0
	N	L:CYS78	3.7	10.0	1.0
	C2	L:NFV701	4.0	10.7	1.0
	C3	L:NFV701	4.1	9.5	1.0
	CA	L:CYS78	4.2	10.1	1.0
	NH2	L:ARG530	4.2	12.5	1.0
	CZ	L:ARG530	4.5	11.9	1.0
	CA	L:CYS75	4.5	9.8	1.0
	CB	L:VAL77	4.5	11.1	1.0
	C1	L:NFV701	4.5	9.7	1.0
	CA	L:CYS597	4.6	10.1	1.0
	CA	L:CYS600	4.6	9.9	1.0
	N	L:CYS600	4.6	9.3	1.0
	NE	L:ARG530	4.7	11.6	1.0
	C	L:VAL77	4.7	10.1	1.0
	CD	L:ARG530	4.8	11.1	1.0
	N2	L:NFV701	4.9	10.3	1.0
	N	L:VAL77	5.0	10.1	1.0
	CA	L:VAL77	5.0	10.4	1.0

Reference:

E.Siebert, A.Schmidt, S.Frielingsdorf, J.Kalms, U.Kuhlmann, O.Lenz, P.Scheerer, I.Zebger, P.Hildebrandt. Resonance Raman Spectroscopic Analysis of the Iron-Sulfur Cluster Redox Chain of the Ralstonia Eutropha Membrane-Bound [Nife]-Hydrogenase J Raman Spectrosc 2021.
ISSN: ISSN 0377-0486
DOI: 10.1002/JRS.6163

Page generated: Thu Oct 10 09:21:41 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy