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Nickel in PDB 7odh: Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State

Enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State

All present enzymatic activity of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State:
1.12.99.6;

Protein crystallography data

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State, PDB code: 7odh was solved by A.Schmidt, J.Kalms, P.Scheerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.59 / 1.34
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.606, 95.676, 120.824, 90, 90, 90
R / Rfree (%) 11.2 / 13.3

Other elements in 7odh:

The structure of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Iron (Fe) 14 atoms
Magnesium (Mg) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State (pdb code 7odh). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State, PDB code: 7odh:

Nickel binding site 1 out of 1 in 7odh

Go back to Nickel Binding Sites List in 7odh
Nickel binding site 1 out of 1 in the Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the O2-Tolerant Mbh-P242C From Ralstonia Eutropha in Its As-Isolated State within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Ni701

b:11.3
occ:1.00
 NI L:NFV701 0.0 11.3 1.0
O4 L:NFV701 1.8 11.5 1.0
SG L:CYS597 2.2 11.7 1.0
SG L:CYS75 2.2 11.3 1.0
SG L:CYS78 2.3 10.2 1.0
SG L:CYS600 2.7 10.8 1.0
FE L:NFV701 2.9 10.1 1.0
CB L:CYS75 3.1 11.0 1.0
CB L:CYS597 3.2 10.6 1.0
CB L:CYS78 3.4 10.0 1.0
CB L:CYS600 3.6 10.0 1.0
N L:CYS78 3.7 10.0 1.0
C2 L:NFV701 4.0 10.7 1.0
C3 L:NFV701 4.1 9.5 1.0
CA L:CYS78 4.2 10.1 1.0
NH2 L:ARG530 4.2 12.5 1.0
CZ L:ARG530 4.5 11.9 1.0
CA L:CYS75 4.5 9.8 1.0
CB L:VAL77 4.5 11.1 1.0
C1 L:NFV701 4.5 9.7 1.0
CA L:CYS597 4.6 10.1 1.0
CA L:CYS600 4.6 9.9 1.0
N L:CYS600 4.6 9.3 1.0
NE L:ARG530 4.7 11.6 1.0
C L:VAL77 4.7 10.1 1.0
CD L:ARG530 4.8 11.1 1.0
N2 L:NFV701 4.9 10.3 1.0
N L:VAL77 5.0 10.1 1.0
CA L:VAL77 5.0 10.4 1.0

Reference:

E.Siebert, A.Schmidt, S.Frielingsdorf, J.Kalms, U.Kuhlmann, O.Lenz, P.Scheerer, I.Zebger, P.Hildebrandt. Resonance Raman Spectroscopic Analysis of the Iron-Sulfur Cluster Redox Chain of the Ralstonia Eutropha Membrane-Bound [Nife]-Hydrogenase J Raman Spectrosc 2021.
ISSN: ISSN 0377-0486
DOI: 10.1002/JRS.6163
Page generated: Thu Oct 10 09:21:41 2024

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