Nickel in PDB 7q6d: E. Coli Ftsa 1-405 Atp 3 Ni

The structure of E. Coli Ftsa 1-405 Atp 3 Ni, PDB code: 7q6d was solved by T.Nierhaus, D.Kureisaite-Ciziene, J.Lowe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.64 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	51.102, 64.177, 65.285, 90, 96.07, 90
R / Rfree (%)	21.7 / 26.9

The structure of E. Coli Ftsa 1-405 Atp 3 Ni also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Nickel atom in the E. Coli Ftsa 1-405 Atp 3 Ni (pdb code 7q6d). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the E. Coli Ftsa 1-405 Atp 3 Ni, PDB code: 7q6d:
Jump to Nickel binding site number: 1; 2; 3;

Nickel binding site 1 out of 3 in the E. Coli Ftsa 1-405 Atp 3 Ni


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of E. Coli Ftsa 1-405 Atp 3 Ni within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni501 b:95.9 occ:1.00 NE2 A:HIS114 2.6 83.4 1.0 CD2 A:HIS114 3.1 78.8 1.0 CE1 A:HIS114 3.8 84.0 1.0 OG A:SER118 4.3 59.8 1.0 CG A:HIS114 4.3 77.3 1.0 ND1 A:HIS114 4.6 77.0 1.0

Nickel binding site 2 out of 3 in the E. Coli Ftsa 1-405 Atp 3 Ni


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of E. Coli Ftsa 1-405 Atp 3 Ni within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni502 b:58.6 occ:1.00 NE2 A:HIS125 2.3 75.9 1.0 CE1 A:HIS125 2.6 75.5 1.0 NE2 A:HIS164 3.2 74.4 1.0 CE1 A:HIS164 3.3 65.7 1.0 CD2 A:HIS125 3.5 80.7 1.0 ND1 A:HIS125 3.8 82.8 1.0 CG A:HIS125 4.3 75.8 1.0 CD2 A:HIS164 4.3 76.6 1.0 ND1 A:HIS164 4.5 56.8 1.0 CD2 A:HIS87 4.6 60.8 1.0 OE2 A:GLU124 4.9 99.5 1.0 O A:HIS87 4.9 64.5 1.0 CG A:HIS87 5.0 74.6 1.0

Nickel binding site 3 out of 3 in the E. Coli Ftsa 1-405 Atp 3 Ni


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of E. Coli Ftsa 1-405 Atp 3 Ni within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni503 b:41.0 occ:1.00 NE2 A:HIS327 2.1 57.3 1.0 NE2 A:HIS326 2.2 32.3 1.0 CE1 A:HIS327 2.9 48.6 1.0 CD2 A:HIS326 3.0 51.3 1.0 CD2 A:HIS327 3.1 59.9 1.0 CE1 A:HIS326 3.3 34.3 1.0 ND1 A:HIS327 4.0 40.2 1.0 CG A:HIS327 4.2 40.2 1.0 CG A:HIS326 4.2 52.3 1.0 ND1 A:HIS326 4.3 38.2 1.0 CG A:ARG320 4.4 66.1 1.0 CD A:ARG320 4.4 74.7 1.0

T.Nierhaus, S.H.Mclaughlin, F.Burmann, D.Kureisaite-Ciziene, S.L.Maslen, J.M.Skehel, C.W.H.Yu, S.M.V.Freund, L.F.H.Funke, J.W.Chin, J.Lowe. Bacterial Divisome Protein Ftsa Forms Curved Antiparallel Double Filaments When Binding to Ftsn. Nat Microbiol V. 7 1686 2022.
ISSN: ESSN 2058-5276
PubMed: 36123441
DOI: 10.1038/S41564-022-01206-9