Nickel in PDB 8iyu: Cfba S11T Variant with Ni(II) Ions

The structure of Cfba S11T Variant with Ni(II) Ions, PDB code: 8iyu was solved by S.Ogawa, T.Fujishiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.50 / 2.10
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	67.18, 67.18, 84.11, 90, 90, 90
R / Rfree (%)	18.6 / 20.4

The binding sites of Nickel atom in the Cfba S11T Variant with Ni(II) Ions (pdb code 8iyu). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Cfba S11T Variant with Ni(II) Ions, PDB code: 8iyu:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Cfba S11T Variant with Ni(II) Ions


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Cfba S11T Variant with Ni(II) Ions within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:79.4 occ:1.00 NE2 A:HIS75 2.3 57.9 1.0 NE2 A:HIS9 2.3 57.6 1.0 O A:HOH324 2.5 59.6 1.0 O A:HOH323 2.7 64.4 1.0 O A:HOH325 2.7 58.0 1.0 CD2 A:HIS75 3.2 56.1 1.0 CD2 A:HIS9 3.3 53.9 1.0 CE1 A:HIS9 3.3 58.4 1.0 CE1 A:HIS75 3.3 61.3 1.0 CG A:HIS75 4.4 55.2 1.0 ND1 A:HIS75 4.4 58.2 1.0 ND1 A:HIS9 4.4 54.9 1.0 CG A:HIS9 4.5 53.2 1.0 CE A:MET41 4.9 60.4 1.0

Nickel binding site 2 out of 2 in the Cfba S11T Variant with Ni(II) Ions


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Cfba S11T Variant with Ni(II) Ions within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni201 b:79.2 occ:1.00 NE2 B:HIS9 2.2 59.4 1.0 NE2 B:HIS75 2.2 57.2 1.0 O B:HOH322 2.5 67.1 1.0 O B:HOH321 2.6 56.8 1.0 O A:HOH325 2.9 58.0 1.0 CE1 B:HIS9 3.2 57.9 1.0 CE1 B:HIS75 3.2 59.7 1.0 CD2 B:HIS75 3.2 54.3 1.0 CD2 B:HIS9 3.2 56.9 1.0 ND1 B:HIS75 4.3 57.3 1.0 ND1 B:HIS9 4.3 53.6 1.0 CG B:HIS75 4.3 53.6 1.0 CG B:HIS9 4.4 53.2 1.0 CE B:MET41 4.7 58.0 1.0

S.Ogawa, M.Hikita, T.Fujishiro. Substrate Selectivity of Cfba To Be Published.