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Nickel in PDB, part 58 (files: 2281-2320), PDB 8cjb-8ka3

Experimental structures of coordination spheres of Nickel (Ni) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Nickel atoms. PDB files: 2281-2320 (PDB 8cjb-8ka3).
  1. 8cjb (Ni: 3) - A268M Variant of the Codh/Acs Complex of C. Hydrogenoformans
    Other atoms: Na (1); Fe (14);
  2. 8cjc (Ni: 3) - F515A Variant of the Codh/Acs Complex of C. Hydrogenoformans
    Other atoms: Fe (14); Na (1);
  3. 8cmw (Ni: 3) - A225L Variant of the Codh/Acs Complex of C. Hydrogenoformans
    Other atoms: Na (1); Fe (14);
  4. 8cwr (Ni: 3) - Complex Structure of WHIB3 and the SIGMAAR4-Rnap Beta Flap Tip Chimera in Space Group R3
    Other atoms: Fe (4);
  5. 8cwt (Ni: 7) - Complex Structure of WHIB3 and the SIGMAAR4-Rnap Beta Flap Tip Chimera in Space Group P43212
    Other atoms: Fe (12);
  6. 8dcb (Ni: 5) - Rna Ligase Rtcb From Pyrococcus Horikoshii in Complex with NI2+ and Gtp
    Other atoms: Cl (2);
  7. 8dmu (Ni: 2) - Crystal Structure of Macrodomain CG3568 From Drosophila Melanogaster in Complex with Adp-Ribose
    Other atoms: Cl (6);
  8. 8dqv (Ni: 2) - The 1.52 Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Catalytic Dimer (HUC2S2L)
    Other atoms: Fe (20); Mg (2);
  9. 8drd (Ni: 2) - Ni(II)-Bound B2 Dimer (H60/H100/H104)
    Other atoms: Fe (2);
  10. 8etf (Ni: 2) - Bile Salt Hydrolase B From Lactobacillus Gasseri with Covalent Inhibitor Bound
  11. 8evn (Ni: 4) - Sulfatase From Mycobacterium Tuberculosis (RV3406) in Complex with N- Oxalylglycine (Nog)
  12. 8evo (Ni: 4) - Sulfatase From Mycobacterium Tuberculosis (RV3406) in Complex with Inhibitor FG2216
    Other atoms: Cl (1);
  13. 8ezf (Ni: 1) - A Tethered Niacin-Derived Pincer Complex with A Nickel-Carbon or Sulfite-Carbon Bond in Lactate Racemase R98A/R100A Variant
    Other atoms: Cl (1); Ca (2); Mg (2);
  14. 8ezh (Ni: 1) - A Tethered Niacin-Derived Pincer Complex with A Nickel-Carbon Bond in Lactate Racemase R98A/R100A Variant Modeled with Sulfite-Npn Adduct
    Other atoms: Mg (2); Ca (2); Cl (3);
  15. 8ezi (Ni: 1) - A Tethered Niacin-Derived Pincer Complex with A Nickel-Carbon Bond in Lactate Racemase R98A/R100A Variant Modeled with Separated Sulfite and Npn
    Other atoms: Ca (2); Mg (2); Cl (3);
  16. 8fao (Ni: 2) - Bile Salt Hydrolase B From Lactobacillus Gasseri with Covalent Inhibitor Bound
  17. 8fvf (Ni: 9) - Bromodomain of EP300 Liganded with Ccs-1477
    Other atoms: F (4);
  18. 8g6t (Ni: 2) - Bromodomain of Cbp Liganded with Inhibitor ICBP2
    Other atoms: Br (8);
  19. 8gf5 (Ni: 1) - Mcrd Binds Asymmetrically to Methyl-Coenzyme M Reductase Improving Active Site Accessibility During Assembly
  20. 8glf (Ni: 1) - Crystal Structure of Human CD1B in Complex with Sphingomyelin C34:2
    Other atoms: Cl (4); I (2);
  21. 8glg (Ni: 1) - Crystal Structure of Human CD1B in Complex with Phosphatidylethanolamine C34:1
    Other atoms: Cl (4); I (2);
  22. 8hfb (Ni: 4) - Evolved Variant of Quercetin 2,4-Dioxygenase From Bacillus Subtilis
  23. 8icl (Ni: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and NICL2 (5 Millimolar)
    Other atoms: Na (2);
  24. 8iqa (Ni: 4) - Crystal Structure of Pyruvic Oxime Dioxygenase (Pod) From Alcaligenes Faecalis Deleted N-Terminal 18 Residues
  25. 8ix6 (Ni: 1) - Crystal Structure of Pyruvic Oxime Dioxygenase (Pod) From Bradyrhizobium Sp. WSM3983
  26. 8iyu (Ni: 2) - Cfba S11T Variant with Ni(II) Ions
  27. 8izu (Ni: 1) - Crystal Structure of the N-Terminal Domain (Residues 1-137) of Mpxv A7
  28. 8jbc (Ni: 2) - Crystal Structure of the CSM6 K137A Mutant From Thermus Thermophilus HB8 in Its Apo Form
  29. 8ji2 (Ni: 5) - Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan
    Other atoms: Br (6); Fe (2);
  30. 8ji3 (Ni: 1) - Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+
    Other atoms: Br (4); Fe (4);
  31. 8ji4 (Ni: 5) - Crystal Structure of Aetd in Complex with 5-Bromo-L-Tryptophan
    Other atoms: Br (2); Fe (2);
  32. 8ji5 (Ni: 1) - Crystal Structure of Aetd in Complex with 5-Bromo-L-Tryptophan and Two FE2+
    Other atoms: Br (2); Fe (4);
  33. 8ji6 (Ni: 5) - Crystal Structure of Aetd in Complex with L-Tryptophan
    Other atoms: Fe (2);
  34. 8ji7 (Ni: 1) - Crystal Structure of Aetd in Complex with L-Tryptophan and Two FE2+
    Other atoms: Fe (4);
  35. 8jqf (Ni: 2) - Structure of Cmcbda in Complex with NI2+ and Glycerol
  36. 8jut (Ni: 2) - Rat Megalin Rap Complex
    Other atoms: Ca (88);
  37. 8juu (Ni: 2) - Rat Megalin
    Other atoms: Ca (88);
  38. 8jx8 (Ni: 2) - Rat Megalin Head
    Other atoms: Ca (10);
  39. 8jxe (Ni: 2) - Rat Megalin Rap Complex Head
    Other atoms: Ca (12);
  40. 8ka3 (Ni: 1) - Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna
Page generated: Sun Dec 15 11:46:57 2024

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