Nickel in PDB 8ka3: Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna

All present enzymatic activity of Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna:
3.1.11.2;

The structure of Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna, PDB code: 8ka3 was solved by W.T.Guo, B.X.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.70 / 3.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	136.731, 52.295, 71.095, 90, 117.03, 90
R / Rfree (%)	24.2 / 30.2

The binding sites of Nickel atom in the Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna (pdb code 8ka3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna, PDB code: 8ka3:

Nickel binding site 1 out of 1 in the Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni601 b:73.4 occ:1.00 OP1 D:3DR101 1.9 74.4 1.0 O D:HOH201 2.1 70.6 1.0 OE2 A:GLU313 2.5 73.1 1.0 OE1 A:GLU313 2.7 71.9 1.0 O3' C:DC10 2.8 86.2 1.0 CD A:GLU313 3.0 72.4 1.0 P D:3DR101 3.2 75.3 1.0 OD2 A:ASP526 3.5 73.0 1.0 O5' D:3DR101 3.6 78.2 1.0 OD1 A:ASN284 3.7 70.8 1.0 OP2 D:3DR101 3.8 77.8 1.0 C3' C:DC10 4.1 90.3 1.0 NE2 A:HIS527 4.3 71.5 1.0 OP3 D:3DR101 4.4 72.0 1.0 OH A:TYR389 4.4 72.7 1.0 CG A:ASP526 4.4 73.1 1.0 CG A:GLU313 4.5 70.4 1.0 C2' C:DC10 4.6 93.3 1.0 CG A:ASN284 4.6 70.5 1.0 OD1 A:ASP526 4.6 72.8 1.0 OD1 A:ASN282 4.7 70.4 1.0 C1' C:DC10 4.7 99.9 1.0 ND2 A:ASN282 4.7 69.7 1.0 C5' D:3DR101 4.8 78.0 1.0 CD2 A:HIS527 4.8 71.2 1.0

W.T.Guo, B.X.Wu. Arabidopsis Ap Endonuclease Apr Complex with 22BP Thf-Containing Dna To Be Published.