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Nickel in PDB 8ji3: Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+

Protein crystallography data

The structure of Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+, PDB code: 8ji3 was solved by H.Li, L.Dai, H.B.Zheng, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.44 / 1.78
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 65.497, 65.497, 117.118, 90, 90, 90
R / Rfree (%) 19.3 / 24.4

Other elements in 8ji3:

The structure of Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+ also contains other interesting chemical elements:

Bromine (Br) 4 atoms
Iron (Fe) 4 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+ (pdb code 8ji3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+, PDB code: 8ji3:

Nickel binding site 1 out of 1 in 8ji3

Go back to Nickel Binding Sites List in 8ji3
Nickel binding site 1 out of 1 in the Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni304

b:99.6
occ:1.00
NE2 B:HIS125 2.0 61.2 1.0
NE2 A:HIS125 2.2 57.7 1.0
OD2 A:ASP126 2.5 82.2 1.0
O B:HOH460 2.6 55.5 1.0
CD2 B:HIS125 2.9 62.3 1.0
CE1 B:HIS125 3.1 62.4 1.0
CD2 A:HIS125 3.1 52.5 1.0
CE1 A:HIS125 3.2 57.5 1.0
OD2 B:ASP126 3.3 76.2 1.0
CG A:ASP126 3.3 74.1 1.0
O B:HOH436 3.9 55.6 1.0
CB A:ASP126 4.0 66.5 1.0
CG B:HIS125 4.1 56.2 1.0
ND1 B:HIS125 4.1 56.6 1.0
OD1 A:ASP126 4.2 77.9 1.0
CG B:ASP126 4.2 71.0 1.0
CG A:HIS125 4.2 49.9 1.0
ND1 A:HIS125 4.2 53.8 1.0
CB B:ASP126 4.5 63.6 1.0
O A:VAL122 4.7 41.6 1.0
O A:HOH403 4.8 53.6 1.0
O B:VAL122 4.9 40.7 1.0

Reference:

H.Li, L.Dai, H.B.Zheng, C.-C.Chen, R.-T.Guo. Crystal Structure of Aetd in Complex with 5,7-Dibromo-L-Tryptophan and Two FE2+ To Be Published.
Page generated: Thu Oct 10 09:43:37 2024

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