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Nickel in PDB 8xc2: The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex

Protein crystallography data

The structure of The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex, PDB code: 8xc2 was solved by Y.W.Lin, H.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.70 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.827, 49.215, 76.748, 90, 90, 90
R / Rfree (%) 17.7 / 18.6

Other elements in 8xc2:

The structure of The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex also contains other interesting chemical elements:

Iron (Fe) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex (pdb code 8xc2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex, PDB code: 8xc2:

Nickel binding site 1 out of 1 in 8xc2

Go back to Nickel Binding Sites List in 8xc2
Nickel binding site 1 out of 1 in the The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni- Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni204

b:28.7
occ:1.00
OD2 A:ASP60 1.7 31.6 1.0
NE2 A:HIS64 2.0 26.1 1.0
NAK A:Y6C202 2.0 28.9 0.5
NAJ A:Y6C202 2.1 17.4 0.5
O A:HOH312 2.2 34.2 1.0
O A:HOH391 2.3 32.8 1.0
CAR A:Y6C202 2.8 26.2 0.5
CAQ A:Y6C202 2.8 25.8 0.5
CG A:ASP60 2.8 35.4 1.0
CD2 A:HIS64 3.0 22.8 1.0
CE1 A:HIS64 3.0 30.6 1.0
CAF A:Y6C202 3.1 38.2 0.5
CAE A:Y6C202 3.1 29.0 0.5
OD1 A:ASP60 3.3 33.4 1.0
O A:HOH406 3.8 44.9 1.0
CB A:ASP60 4.1 21.4 1.0
CAP A:Y6C202 4.1 38.0 0.5
ND1 A:HIS64 4.1 27.7 1.0
CG A:HIS64 4.2 20.8 1.0
CAO A:Y6C202 4.2 35.7 0.5
O1D A:HEM201 4.2 40.3 1.0
O A:HOH420 4.3 33.1 1.0
O A:HOH320 4.3 27.4 1.0
CAD A:Y6C202 4.4 38.1 0.5
CAC A:Y6C202 4.4 26.7 0.5
CD2 A:PHE43 4.6 31.6 1.0
CAH A:Y6C202 4.8 37.3 0.5
CAG A:Y6C202 4.8 29.1 0.5
O A:ASP60 4.9 16.6 1.0

Reference:

Y.W.Lin, H.Yuan. The X-Ray Structure of F46C Myoglobin with A Covalently Linked Ni-Complex To Be Published.
Page generated: Mon Aug 18 22:21:10 2025

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