Nickel in PDB 9fzy: Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)

Enzymatic activity of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)

Other elements in 9fzy:

Nickel Binding Sites:

Nickel binding site 1 out of 4 in 9fzy

Nickel Binding Sites List in 9fzy

Nickel binding site 1 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni802 b:78.9 occ:0.55 SG D:CYS576 2.1 99.1 1.0 SG D:CYS488 2.2 91.5 1.0 SG D:CYS574 2.2 96.4 1.0 FE4 D:SF4801 2.4 83.6 0.8 S1 D:SF4801 2.4 82.7 1.0 CB D:CYS488 3.0 91.9 1.0 NI D:NI803 3.1 92.2 0.8 CB D:CYS574 3.4 98.9 1.0 CB D:CYS576 3.8 101.1 1.0 FE2 D:SF4801 4.1 82.2 0.8 S3 D:SF4801 4.2 82.2 0.8 FE3 D:SF4801 4.2 84.9 0.9 S2 D:SF4801 4.3 83.5 0.9 NE2 D:HIS495 4.4 90.6 1.0 CB D:CYS507 4.4 96.2 1.0 CA D:CYS488 4.5 93.0 1.0 CZ D:PHE491 4.5 105.5 1.0 N D:CYS576 4.5 101.8 1.0 CD1 D:LEU506 4.5 102.0 1.0 CD2 D:HIS495 4.6 90.9 1.0 CA D:CYS574 4.8 99.5 1.0 CA D:CYS576 4.8 101.7 1.0 N D:CYS507 4.9 98.5 1.0 N D:GLY575 4.9 101.3 1.0 N D:CYS488 4.9 94.0 1.0 CG D:LEU506 5.0 101.0 1.0 CA D:CYS507 5.0 97.7 1.0

Nickel binding site 2 out of 4 in 9fzy

Nickel Binding Sites List in 9fzy

Nickel binding site 2 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni803 b:92.2 occ:0.76 N D:CYS576 1.9 101.8 1.0 N D:GLY575 2.1 101.3 1.0 SG D:CYS574 2.2 96.4 1.0 SG D:CYS576 2.2 99.1 1.0 C D:GLY575 2.7 101.9 1.0 CA D:GLY575 2.8 102.1 1.0 CB D:CYS574 2.9 98.9 1.0 CA D:CYS576 2.9 101.7 1.0 C D:CYS574 3.0 100.8 1.0 CB D:CYS576 3.1 101.1 1.0 NI D:NI802 3.1 78.9 0.6 CA D:CYS574 3.3 99.5 1.0 N D:PHE577 3.6 106.0 1.0 N D:CYS574 3.7 99.3 1.0 C D:CYS576 3.7 103.6 1.0 CD1 D:LEU506 3.9 102.0 1.0 O D:GLY575 3.9 104.3 1.0 CD2 D:PHE577 4.0 106.2 1.0 O D:CYS574 4.1 102.8 1.0 CE2 D:PHE491 4.2 105.6 1.0 CZ D:PHE491 4.2 105.5 1.0 CE2 D:PHE577 4.4 106.2 1.0 SG D:CYS488 4.6 91.5 1.0 O D:CYS576 4.9 104.5 1.0 CG D:PHE577 4.9 106.6 1.0 CA D:PHE577 4.9 107.9 1.0 S1 D:SF4801 4.9 82.7 1.0 C D:SER573 5.0 100.8 1.0

Nickel binding site 3 out of 4 in 9fzy

Nickel Binding Sites List in 9fzy

Nickel binding site 3 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni703 b:29.9 occ:0.50 NI B:RQM703 0.0 29.9 0.5 SG B:CYS523 2.1 42.2 1.0 S1 B:RQM703 2.3 26.6 0.9 S4 B:RQM703 2.4 26.7 0.8 FE2 B:RQM703 2.5 30.7 0.6 FE3 B:RQM703 3.0 25.3 0.9 FE1 B:RQM703 3.2 25.1 1.0 S3 B:RQM703 3.3 27.6 0.9 CB B:CYS523 3.4 37.7 1.0 FE4 B:RQM703 3.5 24.6 1.0 SG B:CYS295 4.0 35.7 1.0 NE2 B:HIS259 4.2 38.5 1.0 NZ B:LYS560 4.4 29.8 1.0 S2 B:RQM703 4.5 24.9 1.0 CA B:CYS523 4.7 33.1 1.0 CE B:LYS560 4.8 30.3 1.0 CD2 B:HIS259 4.9 35.1 1.0 SG B:CYS451 5.0 25.0 1.0

Nickel binding site 4 out of 4 in 9fzy

Nickel Binding Sites List in 9fzy

Nickel binding site 4 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3A) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ni702 b:30.0 occ:0.50 NI C:RQM702 0.0 30.0 0.5 SG C:CYS523 2.1 42.0 1.0 S1 C:RQM702 2.3 26.7 1.0 S4 C:RQM702 2.4 26.6 0.8 FE2 C:RQM702 2.5 30.6 0.6 FE3 C:RQM702 3.0 25.2 0.9 FE1 C:RQM702 3.2 24.8 1.0 CB C:CYS523 3.3 37.3 1.0 S3 C:RQM702 3.3 27.5 0.9 FE4 C:RQM702 3.5 24.6 1.0 SG C:CYS295 4.0 36.0 1.0 NE2 C:HIS259 4.2 38.6 1.0 NZ C:LYS560 4.4 29.6 1.0 S2 C:RQM702 4.5 24.9 1.0 CA C:CYS523 4.6 32.8 1.0 CE C:LYS560 4.9 30.2 1.0 SG C:CYS451 5.0 25.0 1.0 CD2 C:HIS259 5.0 35.2 1.0

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