Nickel in PDB 9g00: Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB)

Enzymatic activity of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB)

Other elements in 9g00:

Nickel Binding Sites:

Nickel binding site 1 out of 4 in 9g00

Nickel Binding Sites List in 9g00

Nickel binding site 1 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni802 b:97.9 occ:0.45 SG D:CYS576 2.0 114.3 1.0 SG D:CYS574 2.1 114.2 1.0 SG D:CYS488 2.1 106.9 1.0 S1 D:SF4801 2.4 102.9 0.9 FE4 D:SF4801 2.4 103.0 0.8 NI D:NI803 3.1 100.2 0.7 CB D:CYS488 3.2 109.7 1.0 CB D:CYS574 3.4 114.7 1.0 CB D:CYS576 3.7 116.0 1.0 FE2 D:SF4801 4.0 103.9 0.8 S3 D:SF4801 4.1 103.6 0.7 FE3 D:SF4801 4.2 105.4 0.9 NE2 D:HIS495 4.2 110.6 1.0 S2 D:SF4801 4.3 104.1 0.9 CD2 D:HIS495 4.4 110.3 1.0 N D:CYS576 4.5 117.8 1.0 CA D:CYS488 4.6 111.4 1.0 CA D:CYS576 4.7 117.2 1.0 CA D:CYS574 4.8 114.8 1.0 CB D:CYS507 4.8 115.5 1.0 N D:CYS507 4.9 116.4 1.0 N D:GLY575 4.9 116.3 1.0 SG D:CYS497 4.9 109.0 1.0 CB D:LEU506 4.9 117.5 1.0

Nickel binding site 2 out of 4 in 9g00

Nickel Binding Sites List in 9g00

Nickel binding site 2 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ni803 b:100.2 occ:0.71 N D:CYS576 1.9 117.8 1.0 N D:GLY575 2.0 116.3 1.0 SG D:CYS574 2.2 114.2 1.0 SG D:CYS576 2.2 114.3 1.0 C D:GLY575 2.7 118.0 1.0 CA D:GLY575 2.8 117.2 1.0 CB D:CYS574 2.8 114.7 1.0 CA D:CYS576 2.9 117.2 1.0 C D:CYS574 2.9 115.1 1.0 CB D:CYS576 3.0 116.0 1.0 NI D:NI802 3.1 97.9 0.5 CA D:CYS574 3.2 114.8 1.0 N D:CYS574 3.6 115.4 1.0 N D:PHE577 3.6 123.1 1.0 C D:CYS576 3.7 119.5 1.0 O D:GLY575 3.9 119.7 1.0 O D:CYS574 4.1 116.2 1.0 CD2 D:PHE577 4.1 124.4 1.0 CZ D:PHE491 4.3 132.2 1.0 C46 F:B12502 4.5 180.1 1.0 CE2 D:PHE577 4.5 124.0 1.0 SG D:CYS488 4.6 106.9 1.0 CE2 D:PHE491 4.8 132.1 1.0 O D:CYS576 4.9 119.9 1.0 C D:SER573 4.9 118.0 1.0 CA D:PHE577 4.9 125.7 1.0 CG D:PHE577 4.9 125.2 1.0 S1 D:SF4801 5.0 102.9 0.9

Nickel binding site 3 out of 4 in 9g00

Nickel Binding Sites List in 9g00

Nickel binding site 3 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 3 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni703 b:29.9 occ:0.50 NI B:RQM703 0.0 29.9 0.5 SG B:CYS523 2.1 42.1 1.0 S1 B:RQM703 2.3 26.6 0.9 S4 B:RQM703 2.4 26.7 0.8 FE2 B:RQM703 2.5 30.7 0.6 FE3 B:RQM703 3.0 25.3 0.9 FE1 B:RQM703 3.2 25.1 1.0 S3 B:RQM703 3.3 27.6 0.9 CB B:CYS523 3.4 37.6 1.0 FE4 B:RQM703 3.5 24.7 1.0 SG B:CYS295 4.0 35.8 1.0 NE2 B:HIS259 4.2 38.8 1.0 NZ B:LYS560 4.4 29.9 1.0 S2 B:RQM703 4.5 24.9 1.0 CA B:CYS523 4.7 33.0 1.0 CE B:LYS560 4.8 30.5 1.0 CD2 B:HIS259 4.9 35.3 1.0 SG B:CYS451 5.0 25.0 1.0

Nickel binding site 4 out of 4 in 9g00

Nickel Binding Sites List in 9g00

Nickel binding site 4 out of 4 in the Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 4 of Structure of Carbon Monoxide Dehydrogenase/Acetyl-Coa Synthase (Codh/Acs) in Complex with Corrinoid Iron-Sulfur Protein (Cofesp) From Clostridium Autoethanogenum (Composite Structure, Class 3CB) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ni702 b:30.2 occ:0.51 NI C:RQM702 0.0 30.2 0.5 SG C:CYS523 2.1 41.9 1.0 S1 C:RQM702 2.3 26.7 0.9 S4 C:RQM702 2.4 26.6 0.8 FE2 C:RQM702 2.5 30.6 0.6 FE3 C:RQM702 3.0 25.4 0.9 FE1 C:RQM702 3.2 25.0 1.0 CB C:CYS523 3.3 37.1 1.0 S3 C:RQM702 3.3 27.5 0.9 FE4 C:RQM702 3.5 24.7 1.0 SG C:CYS295 4.0 36.0 1.0 NE2 C:HIS259 4.2 38.8 1.0 NZ C:LYS560 4.4 29.8 1.0 S2 C:RQM702 4.5 24.9 1.0 CA C:CYS523 4.7 32.7 1.0 CE C:LYS560 4.9 30.4 1.0 CD2 C:HIS259 5.0 35.3 1.0 SG C:CYS451 5.0 25.0 1.0

Reference: