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Nickel in PDB 5ard: Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase

Enzymatic activity of Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase

All present enzymatic activity of Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase:
3.4.21.62;

Protein crystallography data

The structure of Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase, PDB code: 5ard was solved by M.Sharma, A.Diaz-Rodriguez, W.A.Offen, M.E.Palm-Espling, A.Pordea, M.R.Wormald, M.Mcdonough, G.J.Davies, B.G.Davis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.37 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.059, 61.280, 74.660, 90.00, 90.00, 90.00
R / Rfree (%) 13.492 / 15.442

Other elements in 5ard:

The structure of Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase (pdb code 5ard). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase, PDB code: 5ard:

Nickel binding site 1 out of 1 in 5ard

Go back to Nickel Binding Sites List in 5ard
Nickel binding site 1 out of 1 in the Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1280

b:19.6
occ:0.50
 O A:HOH2224 1.9 23.7 0.5
O A:HOH2223 2.0 19.1 0.5
N15 A:EI31279 2.1 16.2 0.5
N6 A:EI31279 2.1 14.7 0.5
O A:HOH2225 2.2 19.3 0.5
O A:HOH2178 2.2 26.1 0.5
C14 A:EI31279 2.9 15.6 0.5
C5 A:EI31279 2.9 15.0 0.5
C7 A:EI31279 3.0 15.4 0.5
C16 A:EI31279 3.1 17.6 0.5
OH A:TYR209 4.1 24.1 1.0
C19 A:EI31279 4.2 16.0 0.5
C4 A:EI31279 4.2 15.2 0.5
C2 A:EI31279 4.3 16.1 0.5
C17 A:EI31279 4.4 17.2 0.5
C3 A:EI31279 4.8 15.7 0.5
C18 A:EI31279 4.8 16.2 0.5

Reference:

M.Sharma, A.Diaz-Rodriguez, W.A.Offen, M.E.Palm-Espling, A.Pordea, M.R.Wormald, M.Mcdonough, G.J.Davies, B.G.Davis. Cooperative Bio-Metallic Selectivity in A Tailored Protease Enables Creation of A C-C Cross-Coupling Heckase To Be Published.
Page generated: Mon Aug 18 19:56:33 2025

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