Atomistry » Nickel » PDB 5e6m-5i14 » 5f3m
Atomistry »
  Nickel »
    PDB 5e6m-5i14 »
      5f3m »

Nickel in PDB 5f3m: Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .

Enzymatic activity of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .

All present enzymatic activity of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .:
4.1.2.25;

Protein crystallography data

The structure of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution ., PDB code: 5f3m was solved by N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Csgid, Centerfor Structural Genomics Of Infectious Diseases, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.66 / 1.50
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 87.974, 87.974, 104.549, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 16.1

Other elements in 5f3m:

The structure of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . (pdb code 5f3m). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution ., PDB code: 5f3m:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 5f3m

Go back to Nickel Binding Sites List in 5f3m
Nickel binding site 1 out of 2 in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni202

b:30.3
occ:0.50
O A:HOH301 2.0 33.6 1.0
NE2 A:HIS49 2.1 24.5 1.0
O A:HOH380 2.1 31.2 1.0
CE1 A:HIS49 3.0 27.5 1.0
CD2 A:HIS49 3.1 21.7 1.0
OD2 A:ASP46 3.8 24.7 0.7
ND1 A:HIS49 4.1 28.8 1.0
OD2 A:ASP46 4.2 23.7 0.3
CG A:HIS49 4.2 23.6 1.0
CG A:ASP46 4.8 22.4 0.7
CB A:ASP46 5.0 20.8 0.7

Nickel binding site 2 out of 2 in 5f3m

Go back to Nickel Binding Sites List in 5f3m
Nickel binding site 2 out of 2 in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni202

b:19.9
occ:0.50
O B:HOH370 2.0 26.2 0.5
O B:HOH381 2.1 27.1 0.5
NE2 B:HIS49 2.1 17.7 1.0
O B:HOH378 2.1 22.8 0.9
CE1 B:HIS49 3.0 20.9 1.0
CD2 B:HIS49 3.1 19.8 1.0
ND1 B:HIS49 4.2 21.8 1.0
CG B:HIS49 4.2 20.8 1.0
OE2 B:GLU48 4.2 30.7 0.7
O B:HOH336 4.3 32.3 1.0
O B:HOH374 4.4 22.9 1.0
OD2 B:ASP46 4.4 21.7 0.5
OD2 B:ASP46 4.6 27.2 0.5

Reference:

N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Csgid, Center For Structural Genomics Of Infectious Diseases. Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . To Be Published.
Page generated: Thu Oct 10 06:21:30 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy