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Nickel in PDB 5f3m: Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .

Enzymatic activity of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .

All present enzymatic activity of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .:
4.1.2.25;

Protein crystallography data

The structure of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution ., PDB code: 5f3m was solved by N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Csgid, Centerfor Structural Genomics Of Infectious Diseases, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.66 / 1.50
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 87.974, 87.974, 104.549, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 16.1

Other elements in 5f3m:

The structure of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . (pdb code 5f3m). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution ., PDB code: 5f3m:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 5f3m

Go back to Nickel Binding Sites List in 5f3m
Nickel binding site 1 out of 2 in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni202

b:30.3
occ:0.50
O A:HOH301 2.0 33.6 1.0
NE2 A:HIS49 2.1 24.5 1.0
O A:HOH380 2.1 31.2 1.0
CE1 A:HIS49 3.0 27.5 1.0
CD2 A:HIS49 3.1 21.7 1.0
OD2 A:ASP46 3.8 24.7 0.7
ND1 A:HIS49 4.1 28.8 1.0
OD2 A:ASP46 4.2 23.7 0.3
CG A:HIS49 4.2 23.6 1.0
CG A:ASP46 4.8 22.4 0.7
CB A:ASP46 5.0 20.8 0.7

Nickel binding site 2 out of 2 in 5f3m

Go back to Nickel Binding Sites List in 5f3m
Nickel binding site 2 out of 2 in the Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution .


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni202

b:19.9
occ:0.50
O B:HOH370 2.0 26.2 0.5
O B:HOH381 2.1 27.1 0.5
NE2 B:HIS49 2.1 17.7 1.0
O B:HOH378 2.1 22.8 0.9
CE1 B:HIS49 3.0 20.9 1.0
CD2 B:HIS49 3.1 19.8 1.0
ND1 B:HIS49 4.2 21.8 1.0
CG B:HIS49 4.2 20.8 1.0
OE2 B:GLU48 4.2 30.7 0.7
O B:HOH336 4.3 32.3 1.0
O B:HOH374 4.4 22.9 1.0
OD2 B:ASP46 4.4 21.7 0.5
OD2 B:ASP46 4.6 27.2 0.5

Reference:

N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Csgid, Center For Structural Genomics Of Infectious Diseases. Crystal Structure of Dihydroneopterin Aldolase From Bacillus Anthracis Complexed with L-Neopterin at 1.5 Angstroms Resolution . To Be Published.
Page generated: Wed Dec 16 01:40:48 2020

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